assembly_accession
string
bioproject
string
biosample
string
wgs_master
string
refseq_category
string
taxid
int64
species_taxid
int64
organism_name
string
infraspecific_name
string
isolate
string
version_status
string
assembly_level
string
release_type
string
genome_rep
string
seq_rel_date
string
asm_name
string
asm_submitter
string
gbrs_paired_asm
string
paired_asm_comp
string
ftp_path
string
excluded_from_refseq
string
relation_to_type_material
string
asm_not_live_date
string
assembly_type
string
group
string
genome_size
int64
genome_size_ungapped
int64
gc_percent
float64
replicon_count
int64
scaffold_count
int64
contig_count
int64
annotation_provider
string
annotation_name
string
annotation_date
string
total_gene_count
int64
protein_coding_gene_count
int64
non_coding_gene_count
int64
pubmed_id
string
GCF_000007465.2
PRJNA224116
SAMN02604090
na
na
210,007
1,309
Streptococcus mutans UA159
strain=UA159
na
latest
Complete Genome
Major
Full
2011-09-26
ASM746v2
Univ. Oklahoma
GCA_000007465.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/465/GCF_000007465.2_ASM746v2/
na
na
na
haploid
bacteria
2,032,925
2,032,925
37
1
1
1
NCBI RefSeq
GCF_000007465.2-RS_2024_08_08
2024-08-08
2,008
1,863
84
12397186
GCF_000007485.1
PRJNA224116
SAMN02603248
na
na
203,267
2,039
Tropheryma whipplei str. Twist
strain=Twist
na
latest
Complete Genome
Major
Full
2003-07-03
ASM748v1
Genoscope
GCA_000007485.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/485/GCF_000007485.1_ASM748v1/
na
assembly from type material
na
haploid
bacteria
927,303
927,303
46.5
1
1
1
NCBI RefSeq
GCF_000007485.1-RS_2025_01_13
2025-01-13
904
841
56
12902375
GCF_000007505.1
PRJNA224116
SAMN02603682
na
reference genome
204,722
29,461
Brucella suis 1330
strain=1330
na
latest
Complete Genome
Major
Full
2005-01-03
ASM750v1
NITE/TIGR
GCA_000007505.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/505/GCF_000007505.1_ASM750v1/
na
assembly from type material
na
haploid
bacteria
3,315,175
3,315,175
57.5
2
2
2
NCBI RefSeq
GCF_000007505.1-RS_2024_08_07
2024-08-07
3,233
3,031
68
12271122
GCF_000007525.1
PRJNA224116
SAMN02603675
na
na
206,672
216,816
Bifidobacterium longum NCC2705
strain=NCC2705
na
latest
Complete Genome
Major
Full
2005-01-21
ASM752v1
Nestle Research Center, Switzerland
GCA_000007525.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/525/GCF_000007525.1_ASM752v1/
na
na
na
haploid
bacteria
2,260,266
2,260,266
60
2
2
2
NCBI RefSeq
GCF_000007525.1-RS_2024_11_27
2024-11-27
1,908
1,787
71
12381787
GCF_000007545.1
PRJNA224116
SAMN02604095
na
na
209,261
28,901
Salmonella enterica subsp. enterica serovar Typhi str. Ty2
strain=Ty2
na
latest
Complete Genome
Major
Full
2003-03-21
ASM754v1
Univ. Wisconsin
GCA_000007545.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/545/GCF_000007545.1_ASM754v1/
na
assembly from heterotypic synonym type material
na
haploid
bacteria
4,791,961
4,791,961
52
1
1
1
NCBI RefSeq
GCF_000007545.1-RS_2024_06_26
2024-06-26
4,707
4,280
111
12644504
GCF_000007565.2
PRJNA224116
SAMN02603999
na
na
160,488
303
Pseudomonas putida KT2440
strain=KT2440
na
latest
Complete Genome
Major
Full
2016-03-04
ASM756v2
TIGR
GCA_000007565.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/565/GCF_000007565.2_ASM756v2/
na
na
na
haploid
bacteria
6,181,873
6,181,873
61.5
1
1
1
NCBI RefSeq
GCF_000007565.2-RS_2025_02_17
2025-02-17
5,719
5,487
100
12534463;26913973
GCF_000007585.1
PRJNA224116
SAMN02603720
na
na
242,619
837
Porphyromonas gingivalis W83
strain=W83
na
latest
Complete Genome
Major
Full
2003-09-09
ASM758v1
Porphyromonas gingivalis Genome Project
GCA_000007585.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/585/GCF_000007585.1_ASM758v1/
na
na
na
haploid
bacteria
2,343,476
2,343,476
48.5
1
1
1
NCBI RefSeq
GCF_000007585.1-RS_2024_10_23
2024-10-23
2,082
1,938
67
12949112
GCF_000007605.1
PRJNA224116
SAMN02603993
na
reference genome
227,941
83,557
Chlamydia caviae GPIC
na
GPIC
latest
Complete Genome
Major
Full
2003-04-15
ASM760v1
TIGR
GCA_000007605.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/605/GCF_000007605.1_ASM760v1/
na
assembly from type material
na
haploid
bacteria
1,181,356
1,181,356
39
2
2
2
NCBI RefSeq
GCF_000007605.1-RS_2025_03_27
2025-03-27
1,043
994
44
12682364
GCF_000007625.1
PRJNA224116
SAMN02603289
na
reference genome
212,717
1,513
Clostridium tetani E88
strain=Massachusetts substr. E88
na
latest
Complete Genome
Major
Full
2003-02-05
ASM762v1
Gottingen Genomics Laboratory
GCA_000007625.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/625/GCF_000007625.1_ASM762v1/
na
na
na
haploid
bacteria
2,873,333
2,873,333
28.5
2
2
2
NCBI RefSeq
GCF_000007625.1-RS_2025_04_01
2025-04-01
2,865
2,752
76
12552129
GCF_000007645.1
PRJNA224116
SAMN02603126
na
na
176,280
1,282
Staphylococcus epidermidis ATCC 12228
strain=ATCC 12228
na
latest
Complete Genome
Major
Full
2003-01-02
ASM764v1
Chinese National HGC, Shanghai
GCA_000007645.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/645/GCF_000007645.1_ASM764v1/
na
na
na
haploid
bacteria
2,564,615
2,564,615
32
7
7
7
NCBI RefSeq
GCF_000007645.1-RS_2025_03_27
2025-03-27
2,447
2,288
81
12950922
GCF_000007665.1
PRJNA224116
SAMN02603772
na
na
281,090
1,575
Leifsonia xyli subsp. xyli str. CTCB07
strain=CTCB07
na
latest
Complete Genome
Major
Full
2004-08-04
ASM766v1
Sao Paulo state (Brazil) Consortium
GCA_000007665.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/665/GCF_000007665.1_ASM766v1/
na
na
na
haploid
bacteria
2,584,158
2,584,158
67.5
1
1
1
NCBI RefSeq
GCF_000007665.1-RS_2024_08_17
2024-08-17
2,716
2,405
51
15305603
GCF_000007685.1
PRJNA224116
SAMN02603847
na
na
267,671
173
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
strain=Fiocruz L1-130
na
latest
Complete Genome
Major
Full
2004-03-23
ASM768v1
Sao Paulo state (Brazil) Consortium
GCA_000007685.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/685/GCF_000007685.1_ASM768v1/
na
na
na
haploid
bacteria
4,627,366
4,627,366
35
2
2
2
NCBI RefSeq
GCF_000007685.1-RS_2025_06_11
2025-06-11
3,770
3,599
44
15028702
GCF_000007705.1
PRJNA224116
SAMN02603528
na
reference genome
243,365
536
Chromobacterium violaceum ATCC 12472
strain=ATCC 12472
na
latest
Complete Genome
Major
Full
2003-09-08
ASM770v1
LNCC, Brazil
GCA_000007705.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/705/GCF_000007705.1_ASM770v1/
na
assembly from type material
na
haploid
bacteria
4,751,080
4,751,080
65
1
1
1
NCBI RefSeq
GCF_000007705.1-RS_2024_12_02
2024-12-02
4,493
4,340
128
14500782
GCF_000007725.1
PRJNA224116
SAMN02604289
na
na
224,915
9
Buchnera aphidicola str. Bp (Baizongia pistaciae)
strain=Bp (Baizongia pistaciae)
na
latest
Complete Genome
Major
Full
2003-01-27
ASM772v1
Valencia Univ.
GCA_000007725.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/725/GCF_000007725.1_ASM772v1/
na
na
na
haploid
bacteria
618,379
618,379
25.5
2
2
2
NCBI RefSeq
GCF_000007725.1-RS_2025_02_20
2025-02-20
561
517
38
12522265
GCF_000007745.1
PRJNA224116
SAMN02603473
na
reference genome
221,988
157,673
[Mannheimia] succiniciproducens MBEL55E
strain=MBEL55E
na
latest
Complete Genome
Major
Full
2004-09-22
ASM774v1
Korea Advanced Institute of Science and Technology, Republic of Korea, Yuseong-gu
GCA_000007745.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/745/GCF_000007745.1_ASM774v1/
na
assembly from type material
na
haploid
bacteria
2,314,078
2,314,078
42.5
1
1
1
NCBI RefSeq
GCF_000007745.1-RS_2024_11_26
2024-11-26
2,192
2,080
82
15378067
GCF_000007765.2
PRJNA57631
SAMN02603970
na
reference genome
227,377
777
Coxiella burnetii RSA 493
strain=RSA 493
na
latest
Complete Genome
Major
Full
2016-11-10
ASM776v2
TIGR
GCA_000007765.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/765/GCF_000007765.2_ASM776v2/
na
na
na
haploid
bacteria
2,032,807
2,032,807
42.5
2
2
2
NCBI RefSeq
Annotation submitted by NCBI RefSeq
2017-10-04
2,085
1,833
45
12704232;19047403
GCF_000007785.1
PRJNA224116
SAMN02603978
na
na
226,185
1,351
Enterococcus faecalis V583
strain=V583
na
latest
Complete Genome
Major
Full
2003-03-31
ASM778v1
TIGR
GCA_000007785.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/785/GCF_000007785.1_ASM778v1/
na
na
na
haploid
bacteria
3,359,974
3,359,974
37.5
4
4
4
NCBI RefSeq
GCF_000007785.1-RS_2025_04_15
2025-04-15
3,352
3,191
83
12663927
GCF_000007805.1
PRJNA224116
SAMN02604017
na
reference genome
223,283
251,701
Pseudomonas syringae pv. tomato str. DC3000
strain=DC3000
na
latest
Complete Genome
Major
Full
2003-03-06
ASM780v1
TIGR
GCA_000007805.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/805/GCF_000007805.1_ASM780v1/
na
assembly from type material
na
haploid
bacteria
6,538,260
6,538,260
58.5
3
3
3
NCBI RefSeq
GCF_000007805.1-RS_2024_08_08
2024-08-08
5,933
5,610
83
12928499
GCF_000007825.1
PRJNA224116
SAMN02603340
na
na
226,900
1,396
Bacillus cereus ATCC 14579
strain=ATCC 14579
na
latest
Complete Genome
Major
Full
2003-04-17
ASM782v1
INRA
GCA_000007825.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/825/GCF_000007825.1_ASM782v1/
na
assembly from type material
na
haploid
bacteria
5,427,083
5,427,083
35.5
2
2
2
NCBI RefSeq
GCF_000007825.1-RS_2025_06_11
2025-06-11
5,611
5,117
150
12721630;14617663
GCF_000007845.1
PRJNA224116
SAMN02603432
na
na
198,094
1,392
Bacillus anthracis str. Ames
strain=Ames
na
latest
Complete Genome
Major
Full
2003-04-30
ASM784v1
J. Craig Venter Institute
GCA_000007845.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/845/GCF_000007845.1_ASM784v1/
na
na
na
haploid
bacteria
5,227,293
5,227,293
35.5
1
1
1
NCBI RefSeq
GCF_000007845.1-RS_2025_04_10
2025-04-10
5,502
5,015
133
12721629
GCF_000007865.1
PRJNA224116
SAMN02604086
na
na
262,316
1,764
Mycobacterium avium subsp. paratuberculosis K-10
strain=K-10
na
latest
Complete Genome
Major
Full
2004-01-30
ASM786v1
Univ. Minnesota
GCA_000007865.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/865/GCF_000007865.1_ASM786v1/
na
na
na
haploid
bacteria
4,829,781
4,829,781
69.5
1
1
1
NCBI RefSeq
GCF_000007865.1-RS_2025_03_20
2025-03-20
4,574
4,287
53
16116077
GCF_000007885.1
PRJNA224116
SAMN02602970
na
na
229,193
632
Yersinia pestis biovar Microtus str. 91001
strain=91001
na
latest
Complete Genome
Major
Full
2004-03-15
ASM788v1
Academy of Military Medical Sciences, The Institute of Microbiology and Epidemiology, China
GCA_000007885.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/885/GCF_000007885.1_ASM788v1/
na
na
na
haploid
bacteria
4,803,217
4,803,217
47.5
5
5
5
NCBI RefSeq
GCF_000007885.1-RS_2025_03_03
2025-03-03
4,377
4,044
104
15262951;15368893
GCF_000007905.1
PRJNA224116
SAMN02604097
na
reference genome
235,279
32,025
Helicobacter hepaticus ATCC 51449
strain=ATCC 51449
na
latest
Complete Genome
Major
Full
2003-06-26
ASM790v1
Univ. Wuerzburg
GCA_000007905.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/905/GCF_000007905.1_ASM790v1/
na
na
na
haploid
bacteria
1,799,146
1,799,146
36
1
1
1
NCBI RefSeq
GCF_000007905.1-RS_2025_06_17
2025-06-17
1,858
1,799
44
12810954
GCF_000007925.1
PRJNA224116
SAMN02603142
na
na
167,539
1,219
Prochlorococcus marinus subsp. marinus str. CCMP1375
strain=CCMP1375; SS120
na
latest
Complete Genome
Major
Full
2003-07-25
ASM792v1
CNRS
GCA_000007925.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/925/GCF_000007925.1_ASM792v1/
na
assembly from type material
na
haploid
bacteria
1,751,080
1,751,080
36.5
1
1
1
NCBI RefSeq
GCF_000007925.1-RS_2025_04_10
2025-04-10
1,911
1,859
45
12917486
GCF_000007945.1
PRJNA224116
SAMN02604087
na
na
233,412
730
[Haemophilus] ducreyi 35000HP
strain=35000HP
na
latest
Complete Genome
Major
Full
2003-07-23
ASM794v1
Univ. Ohio
GCA_000007945.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/945/GCF_000007945.1_ASM794v1/
na
na
na
haploid
bacteria
1,698,955
1,698,955
38
1
1
1
NCBI RefSeq
GCF_000007945.1-RS_2025_04_01
2025-04-01
1,695
1,539
71
na
GCF_000007985.2
PRJNA224116
SAMN02603989
na
reference genome
243,231
35,554
Geobacter sulfurreducens PCA
strain=PCA
na
latest
Complete Genome
Major
Full
2012-08-14
ASM798v2
TIGR
GCA_000007985.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/985/GCF_000007985.2_ASM798v2/
na
assembly from type material
na
haploid
bacteria
3,814,128
3,814,128
61
1
1
1
NCBI RefSeq
GCF_000007985.2-RS_2024_08_06
2024-08-06
3,484
3,405
58
14671304;22967216
GCF_000008025.1
PRJNA224116
SAMN02604000
na
na
163,164
163,164
Wolbachia endosymbiont of Drosophila melanogaster
strain=wMel
na
latest
Complete Genome
Major
Full
2004-02-11
ASM802v1
TIGR
GCA_000008025.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/025/GCF_000008025.1_ASM802v1/
na
na
na
haploid
bacteria
1,267,782
1,267,782
35
1
1
1
NCBI RefSeq
GCF_000008025.1-RS_2025_01_08
2025-01-08
1,331
1,215
41
15024419
GCF_000008045.1
PRJNA224116
SAMN02603327
na
reference genome
257,363
785
Rickettsia typhi str. Wilmington
strain=Wilmington
na
latest
Complete Genome
Major
Full
2004-08-20
ASM804v1
Human Genome Sequencing Center, Baylor College of Medicine
GCA_000008045.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/045/GCF_000008045.1_ASM804v1/
na
assembly from type material
na
haploid
bacteria
1,111,496
1,111,496
29
1
1
1
NCBI RefSeq
GCF_000008045.1-RS_2025_01_08
2025-01-08
877
805
40
15317790
GCF_000008065.1
PRJNA224116
SAMN02603676
na
na
257,314
33,959
Lactobacillus johnsonii NCC 533
strain=NCC 533
na
latest
Complete Genome
Major
Full
2004-02-11
ASM806v1
Nestle Research Center, Switzerland
GCA_000008065.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/065/GCF_000008065.1_ASM806v1/
na
na
na
haploid
bacteria
1,992,676
1,992,676
34.5
1
1
1
NCBI RefSeq
GCF_000008065.1-RS_2025_05_21
2025-05-21
1,926
1,775
99
14983040;15006820
GCF_000008105.1
PRJNA224116
SAMN02603109
na
na
321,314
28,901
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
strain=SC-B67
na
latest
Complete Genome
Major
Full
2005-04-04
ASM810v1
Chang Gung Genomic Medical Center, Chang Gung Memorial Hospital
GCA_000008105.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/105/GCF_000008105.1_ASM810v1/
na
na
na
haploid
bacteria
4,944,000
4,944,000
52
3
3
3
NCBI RefSeq
GCF_000008105.1-RS_2025_03_23
2025-03-23
4,906
4,414
117
15781495;16257053
GCF_000008125.1
PRJNA224116
SAMN02603291
na
na
262,724
274
Thermus thermophilus HB27
strain=HB27
na
latest
Complete Genome
Major
Full
2004-04-05
ASM812v1
Gottingen Genomics Laboratory
GCA_000008125.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/125/GCF_000008125.1_ASM812v1/
na
na
na
haploid
bacteria
2,127,482
2,127,482
69.5
2
2
2
NCBI RefSeq
NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
2023-08-06
2,290
2,166
56
15064768
GCF_000008145.1
PRJNA224116
SAMN02604220
na
na
262,698
235
Brucella abortus bv. 1 str. 9-941
strain=9-941
na
latest
Complete Genome
Major
Full
2005-04-06
ASM814v1
University of Minnesota
GCA_000008145.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/145/GCF_000008145.1_ASM814v1/
na
na
na
haploid
bacteria
3,286,445
3,286,445
57
2
2
2
NCBI RefSeq
GCF_000008145.1-RS_2025_04_23
2025-04-23
3,230
2,982
68
15805518
GCF_000008165.1
PRJNA224116
SAMN02598266
na
na
260,799
1,392
Bacillus anthracis str. Sterne
strain=Sterne
na
latest
Complete Genome
Major
Full
2004-06-24
ASM816v1
DOE Joint Genome Institute
GCA_000008165.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/165/GCF_000008165.1_ASM816v1/
na
na
na
haploid
bacteria
5,228,663
5,228,663
35.5
1
1
1
NCBI RefSeq
GCF_000008165.1-RS_2025_04_10
2025-04-10
5,511
5,035
133
na
GCF_000008185.1
PRJNA224116
SAMN02603967
na
reference genome
243,275
158
Treponema denticola ATCC 35405
strain=ATCC 35405
na
latest
Complete Genome
Major
Full
2004-02-10
ASM818v1
TIGR
GCA_000008185.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/185/GCF_000008185.1_ASM818v1/
na
assembly from type material
na
haploid
bacteria
2,843,201
2,843,201
38
1
1
1
NCBI RefSeq
GCF_000008185.1-RS_2025_05_01
2025-05-01
2,630
2,545
53
15064399
GCF_000008205.1
PRJNA224116
SAMN02603526
na
reference genome
262,719
2,099
Mesomycoplasma hyopneumoniae J
strain=J
na
latest
Complete Genome
Major
Full
2005-08-07
ASM820v1
LNCC - Laboratorio Nacional de Computacao Cientifica
GCA_000008205.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/205/GCF_000008205.1_ASM820v1/
na
assembly from type material
na
haploid
bacteria
897,405
897,405
28.5
1
1
1
NCBI RefSeq
GCF_000008205.1-RS_2024_12_13
2024-12-13
723
678
36
16077101
GCF_000008225.1
PRJNA224116
SAMN02603525
na
na
262,722
2,099
Mesomycoplasma hyopneumoniae 7448
strain=7448
na
latest
Complete Genome
Major
Full
2005-08-10
ASM822v1
LNCC - Laboratorio Nacional de Computacao Cientifica
GCA_000008225.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/225/GCF_000008225.1_ASM822v1/
na
na
na
haploid
bacteria
920,079
920,079
28.5
1
1
1
NCBI RefSeq
GCF_000008225.1-RS_2025_02_25
2025-02-25
741
689
36
16077101
GCF_000008245.1
PRJNA224116
SAMN02603527
na
na
262,723
2,109
Mycoplasmopsis synoviae 53
strain=53
na
latest
Complete Genome
Major
Full
2005-08-07
ASM824v1
LNCC - Laboratorio Nacional de Computacao Cientifica
GCA_000008245.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/245/GCF_000008245.1_ASM824v1/
na
na
na
haploid
bacteria
799,476
799,476
28.5
1
1
1
NCBI RefSeq
GCF_000008245.1-RS_2025_02_25
2025-02-25
734
673
44
16077101
GCF_000008265.1
PRJNA224116
SAMN02603345
na
reference genome
1,122,961
46,632
Picrophilus oshimae DSM 9789
strain=DSM 9790
na
latest
Complete Genome
Major
Full
2004-06-09
ASM826v1
Institut of Microbiology and Genetics, University of Goettingen
GCA_000008265.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/265/GCF_000008265.1_ASM826v1/
na
assembly from heterotypic synonym type material
na
haploid
archaea
1,545,895
1,545,895
36
1
1
1
NCBI RefSeq
GCF_000008265.1-RS_2024_10_21
2024-10-21
1,637
1,578
52
15184674
GCF_000008285.1
PRJNA224116
SAMN02603980
na
na
265,669
1,639
Listeria monocytogenes serotype 4b str. F2365
strain=4b F2365
na
latest
Complete Genome
Major
Full
2006-01-24
ASM828v1
TIGR
GCA_000008285.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/285/GCF_000008285.1_ASM828v1/
na
na
na
haploid
bacteria
2,905,187
2,905,187
38
1
1
1
NCBI RefSeq
GCF_000008285.1-RS_2025_01_30
2025-01-30
2,896
2,773
89
15115801
GCF_000008305.1
PRJNA224116
SAMN03081416
na
reference genome
265,311
2,151
Mesoplasma florum L1
strain=L1; ATCC 33453
na
latest
Complete Genome
Major
Full
2004-07-19
ASM830v1
Broad Institute
GCA_000008305.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/305/GCF_000008305.1_ASM830v1/
na
assembly from type material
na
haploid
bacteria
793,224
793,224
27
1
1
1
NCBI RefSeq
GCF_000008305.1-RS_2024_12_09
2024-12-09
726
688
38
na
GCF_000008325.1
PRJNA224116
SAMN02603968
na
reference genome
243,233
414
Methylococcus capsulatus str. Bath
strain=Bath
na
latest
Complete Genome
Major
Full
2005-10-05
ASM832v1
TIGR
GCA_000008325.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/325/GCF_000008325.1_ASM832v1/
na
na
na
haploid
bacteria
3,304,561
3,304,561
63.5
1
1
1
NCBI RefSeq
GCF_000008325.1-RS_2025_03_28
2025-03-28
3,100
3,001
56
15383840
GCF_000008345.1
PRJNA224116
SAMN02603281
na
na
267,747
1,747
Cutibacterium acnes KPA171202
strain=KPA171202
na
latest
Complete Genome
Major
Full
2004-07-30
ASM834v1
Goettingen Genomics Laboratory
GCA_000008345.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/345/GCF_000008345.1_ASM834v1/
na
na
na
haploid
bacteria
2,560,265
2,560,265
60
1
1
1
NCBI RefSeq
GCF_000008345.1-RS_2025_04_02
2025-04-02
2,478
2,339
58
15286373
GCF_000008365.1
PRJNA224116
SAMN03081417
na
reference genome
267,748
2,118
Mycoplasma mobile 163K
strain=163K
na
latest
Complete Genome
Major
Full
2004-05-18
ASM836v1
Broad Institute
GCA_000008365.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/365/GCF_000008365.1_ASM836v1/
na
assembly from type material
na
haploid
bacteria
777,079
777,079
25
1
1
1
NCBI RefSeq
GCF_000008365.1-RS_2024_12_13
2024-12-13
694
656
34
15289470
GCF_000008385.1
PRJNA224116
SAMN02603678
na
reference genome
292,805
80,849
Wolbachia endosymbiont strain TRS of Brugia malayi
na
wBm
latest
Complete Genome
Major
Full
2005-02-04
ASM838v1
New England Biolabs, Inc.
GCA_000008385.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/385/GCF_000008385.1_ASM838v1/
na
na
na
haploid
bacteria
1,080,084
1,080,084
34
1
1
1
NCBI RefSeq
GCF_000008385.1-RS_2025_01_08
2025-01-08
1,074
977
41
15780005
GCF_000008405.1
PRJNA224116
SAMN02603423
na
na
295,358
2,099
Mesomycoplasma hyopneumoniae 232
strain=232
na
latest
Complete Genome
Major
Full
2004-10-10
ASM840v1
Iowa State University
GCA_000008405.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/405/GCF_000008405.1_ASM840v1/
na
na
na
haploid
bacteria
892,758
892,758
28.5
1
1
1
NCBI RefSeq
GCF_000008405.1-RS_2025_02_25
2025-02-25
723
677
36
15489423
GCF_000008425.1
PRJNA224116
SAMN02603292
na
na
279,010
1,402
Bacillus licheniformis DSM 13 = ATCC 14580
strain=DSM 13
na
latest
Complete Genome
Major
Full
2004-09-28
ASM842v1
Gottingen Genomics Laboratory
GCA_000008425.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/425/GCF_000008425.1_ASM842v1/
na
assembly from type material
na
haploid
bacteria
4,222,645
4,222,645
46
1
1
1
NCBI RefSeq
GCF_000008425.1-RS_2025_03_02
2025-03-02
4,376
4,177
98
15383718
GCF_000008445.1
PRJNA224116
SAMN02603433
na
reference genome
261,594
1,392
Bacillus anthracis str. 'Ames Ancestor'
strain=Ames Ancestor; A2084
na
latest
Complete Genome
Major
Full
2004-07-09
ASM844v1
J. Craig Venter Institute
GCA_000008445.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/445/GCF_000008445.1_ASM844v1/
na
na
na
haploid
bacteria
5,503,926
5,503,926
35
3
3
3
NCBI RefSeq
GCF_000008445.1-RS_2025_03_27
2025-03-27
5,763
5,234
133
18952800
GCF_000008465.1
PRJNA224116
SAMN02604184
na
reference genome
283,942
135,577
Idiomarina loihiensis L2TR
strain=L2TR
na
latest
Complete Genome
Major
Full
2004-12-09
ASM846v1
University of Hawaii at Manoa
GCA_000008465.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/465/GCF_000008465.1_ASM846v1/
na
assembly from type material
na
haploid
bacteria
2,839,318
2,839,318
47
1
1
1
NCBI RefSeq
GCF_000008465.1-RS_2025_02_09
2025-02-09
2,723
2,639
72
15596722
GCF_000008485.1
PRJNA224116
SAMN02603156
na
na
272,624
446
Legionella pneumophila subsp. pneumophila str. Philadelphia 1
strain=Philadelphia 1
na
latest
Complete Genome
Major
Full
2004-09-29
ASM848v1
Columbia Genome Center
GCA_000008485.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/485/GCF_000008485.1_ASM848v1/
na
assembly from type material
na
haploid
bacteria
3,397,754
3,397,754
38.5
1
1
1
NCBI RefSeq
GCF_000008485.1-RS_2025_04_23
2025-04-23
3,056
2,976
57
15448271
GCF_000008505.1
PRJNA224116
SAMN02598265
na
na
281,309
1,428
[Bacillus thuringiensis] serovar konkukian str. 97-27
strain=97-27
na
latest
Complete Genome
Major
Full
2004-06-30
ASM850v1
DOE Joint Genome Institute
GCA_000008505.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/505/GCF_000008505.1_ASM850v1/
na
na
na
haploid
bacteria
5,314,794
5,314,794
35.5
2
2
2
NCBI RefSeq
NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
2023-09-11
5,545
5,235
152
16621833
GCF_000008545.1
PRJNA224116
SAMN02603986
na
na
243,274
2,336
Thermotoga maritima MSB8
strain=MSB8
na
latest
Complete Genome
Major
Full
2001-09-18
ASM854v1
TIGR
GCA_000008545.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/545/GCF_000008545.1_ASM854v1/
na
assembly from type material
na
haploid
bacteria
1,860,725
1,860,725
46
1
1
1
NCBI RefSeq
GCF_000008545.1-RS_2025_04_23
2025-04-23
1,923
1,846
52
10360571
GCF_000008565.1
PRJNA224116
SAMN02603976
na
na
243,230
1,299
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
strain=R1
na
latest
Complete Genome
Major
Full
2001-09-28
ASM856v1
TIGR
GCA_000008565.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/565/GCF_000008565.1_ASM856v1/
na
assembly from type material
na
haploid
bacteria
3,284,156
3,284,156
66.5
4
4
4
NCBI RefSeq
GCF_000008565.1-RS_2025_04_01
2025-04-01
3,304
3,159
62
10567266
GCF_000008585.1
PRJNA224116
SAMN02603992
na
na
83,331
1,773
Mycobacterium tuberculosis CDC1551
strain=CDC1551
na
latest
Complete Genome
Major
Full
2004-08-04
ASM858v1
TIGR
GCA_000008585.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/585/GCF_000008585.1_ASM858v1/
na
na
na
haploid
bacteria
4,403,837
4,403,837
65.5
1
1
1
NCBI RefSeq
GCF_000008585.1-RS_2025_06_28
2025-06-28
4,161
3,859
51
12218036
GCF_000008605.1
PRJNA224116
SAMN02604348
na
na
243,276
160
Treponema pallidum subsp. pallidum str. Nichols
strain=Nichols
na
latest
Complete Genome
Major
Full
2001-09-18
ASM860v1
US DOE Joint Genome Institute (JGI-PGF)
GCA_000008605.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/605/GCF_000008605.1_ASM860v1/
na
assembly from type material
na
haploid
bacteria
1,138,011
1,138,011
53
1
1
1
NCBI RefSeq
GCF_000008605.1-RS_2025_03_02
2025-03-02
1,062
986
54
9665876
GCF_000008625.1
PRJNA224116
SAMN02603207
na
reference genome
224,324
63,363
Aquifex aeolicus VF5
strain=VF5
na
latest
Complete Genome
Major
Full
2001-08-23
ASM862v1
DIVERSA
GCA_000008625.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/625/GCF_000008625.1_ASM862v1/
na
assembly from type material
na
haploid
bacteria
1,590,791
1,590,791
43.5
2
2
2
NCBI RefSeq
GCF_000008625.1-RS_2025_05_05
2025-05-05
1,826
1,743
52
9537320
GCF_000008645.1
PRJNA224116
SAMN02603244
na
na
187,420
145,262
Methanothermobacter thermautotrophicus str. Delta H
strain=Delta H
na
latest
Complete Genome
Major
Full
2001-09-19
ASM864v1
Genome Therapeutics Corporation
GCA_000008645.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/645/GCF_000008645.1_ASM864v1/
na
assembly from type material
na
haploid
archaea
1,751,377
1,751,377
49.5
1
1
1
NCBI RefSeq
GCF_000008645.1-RS_2024_10_21
2024-10-21
1,903
1,802
48
9371463
GCF_000008665.1
PRJNA224116
SAMN02603985
na
reference genome
224,325
2,234
Archaeoglobus fulgidus DSM 4304
strain=DSM 4304
na
latest
Complete Genome
Major
Full
2000-12-01
ASM866v1
TIGR
GCA_000008665.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/665/GCF_000008665.1_ASM866v1/
na
assembly from type material
na
haploid
archaea
2,178,400
2,178,400
48.5
1
1
1
NCBI RefSeq
GCF_000008665.1-RS_2024_10_21
2024-10-21
2,563
2,472
51
9389475
GCF_000008685.2
PRJNA224116
SAMN02603966
na
na
224,326
139
Borreliella burgdorferi B31
strain=B31
na
latest
Complete Genome
Major
Full
2011-11-09
ASM868v2
TIGR
GCA_000008685.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/685/GCF_000008685.2_ASM868v2/
na
assembly from type material
na
haploid
bacteria
1,521,208
1,521,208
28
22
22
22
NCBI RefSeq
GCF_000008685.2-RS_2025_04_23
2025-04-23
1,568
1,456
40
9403685;10672174
GCF_000008725.1
PRJNA57637
na
na
reference genome
272,561
813
Chlamydia trachomatis D/UW-3/CX
strain=D/UW-3/CX
na
latest
Complete Genome
Major
Full
2001-09-13
ASM872v1
ChGP
GCA_000008725.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/725/GCF_000008725.1_ASM872v1/
na
na
na
haploid
bacteria
1,042,519
1,042,519
41.5
1
1
1
NCBI RefSeq
Annotation submitted by NCBI RefSeq
2016-08-03
935
887
45
9784136
GCF_000008745.1
PRJNA224116
SAMN02603115
na
na
115,713
83,558
Chlamydia pneumoniae CWL029
strain=CWL029
na
latest
Complete Genome
Major
Full
2001-09-14
ASM874v1
ChGP
GCA_000008745.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/745/GCF_000008745.1_ASM874v1/
na
na
na
haploid
bacteria
1,230,230
1,230,230
40.5
1
1
1
NCBI RefSeq
GCF_000008745.1-RS_2024_11_20
2024-11-20
1,096
1,037
44
10192388
GCF_000008765.1
PRJNA224116
SAMN02603243
na
na
272,562
1,488
Clostridium acetobutylicum ATCC 824
strain=ATCC 824
na
latest
Complete Genome
Major
Full
2001-10-03
ASM876v1
Genome Therapeutics
GCA_000008765.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/765/GCF_000008765.1_ASM876v1/
na
assembly from type material
na
haploid
bacteria
4,132,880
4,132,880
31
2
2
2
NCBI RefSeq
GCF_000008765.1-RS_2025_04_10
2025-04-10
3,992
3,836
112
11466286
GCF_000008785.1
PRJNA224116
SAMN02602990
na
na
85,963
210
Helicobacter pylori J99
strain=J99
na
latest
Complete Genome
Major
Full
2001-09-13
ASM878v1
ASTRA
GCA_000008785.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/785/GCF_000008785.1_ASM878v1/
na
na
na
haploid
bacteria
1,643,831
1,643,831
39
1
1
1
NCBI RefSeq
GCF_000008785.1-RS_2025_04_23
2025-04-23
1,575
1,458
45
9923682
GCF_000008805.1
PRJNA224116
SAMN02603997
na
na
122,586
487
Neisseria meningitidis MC58
strain=MC58
na
latest
Complete Genome
Major
Full
2005-10-06
ASM880v1
TIGR
GCA_000008805.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/805/GCF_000008805.1_ASM880v1/
na
na
na
haploid
bacteria
2,272,360
2,272,360
51.5
1
1
1
NCBI RefSeq
GCF_000008805.1-RS_2025_01_06
2025-01-06
2,266
2,001
75
10710307
GCF_000008865.2
PRJNA57781
SAMN01911278
na
reference genome
386,585
562
Escherichia coli O157:H7 str. Sakai
strain=Sakai substr. RIMD 0509952
na
latest
Complete Genome
Major
Full
2018-06-08
ASM886v2
GIRC
GCA_000008865.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/865/GCF_000008865.2_ASM886v2/
na
na
na
haploid
bacteria
5,594,605
5,594,605
50.5
3
3
3
NCBI RefSeq
Annotation submitted by NCBI RefSeq
2021-02-12
5,417
5,155
126
9628576;10734605;11108008;11111050;11258796
GCF_000008925.1
PRJNA224116
SAMN02604111
na
na
362,948
1,624
Ligilactobacillus salivarius UCC118
strain=UCC118
na
latest
Complete Genome
Major
Full
2006-04-01
ASM892v1
University College Cork
GCA_000008925.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/925/GCF_000008925.1_ASM892v1/
na
na
na
haploid
bacteria
2,133,977
2,133,977
33
4
4
4
NCBI RefSeq
GCF_000008925.1-RS_2024_09_10
2024-09-10
2,182
2,017
101
16617113;18390685
GCF_000008945.1
PRJNA224116
SAMN02603512
na
na
205,913
216,816
Bifidobacterium longum DJO10A
strain=DJO10A
na
latest
Complete Genome
Major
Full
2008-06-05
ASM894v1
Lactic Acid Bacteria Genome Consortium
GCA_000008945.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/945/GCF_000008945.1_ASM894v1/
na
na
na
haploid
bacteria
2,389,526
2,389,526
60
3
3
3
NCBI RefSeq
GCF_000008945.1-RS_2025_03_27
2025-03-27
2,044
1,903
74
16391088;18505588
GCF_000008985.1
PRJNA224116
SAMEA3138185
na
na
177,416
263
Francisella tularensis subsp. tularensis SCHU S4
strain=SCHU S4
na
latest
Complete Genome
Major
Full
2009-08-14
ASM898v1
Swedish Defence Research Agency
GCA_000008985.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/985/GCF_000008985.1_ASM898v1/
na
na
na
haploid
bacteria
1,892,775
1,892,775
32.5
1
1
1
NCBI RefSeq
GCF_000008985.1-RS_2025_02_10
2025-02-10
1,941
1,723
52
15640799
GCF_000009005.1
PRJNA224116
SAMEA3138186
na
na
273,036
1,280
Staphylococcus aureus RF122
strain=RF122
na
latest
Complete Genome
Major
Full
2005-11-29
ASM900v1
Univ. Minnesota
GCA_000009005.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/005/GCF_000009005.1_ASM900v1/
na
na
na
haploid
bacteria
2,742,531
2,742,531
33
1
1
1
NCBI RefSeq
GCF_000009005.1-RS_2025_05_23
2025-05-23
2,754
2,487
79
17971880
GCF_000009025.1
PRJNA224116
SAMEA3138187
na
na
255,470
61,435
Dehalococcoides mccartyi CBDB1
strain=CBDB1
na
latest
Complete Genome
Major
Full
2005-08-24
ASM902v1
Max Planck Institute
GCA_000009025.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/025/GCF_000009025.1_ASM902v1/
na
na
na
haploid
bacteria
1,395,502
1,395,502
47
1
1
1
NCBI RefSeq
GCF_000009025.1-RS_2025_03_18
2025-03-18
1,488
1,430
52
16116419
GCF_000009045.1
PRJNA76
SAMEA3138188
na
reference genome
224,308
1,423
Bacillus subtilis subsp. subtilis str. 168
strain=168
na
latest
Complete Genome
Major
Full
2009-08-12
ASM904v1
BSNR
GCA_000009045.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/045/GCF_000009045.1_ASM904v1/
na
assembly from type material
na
haploid
bacteria
4,215,606
4,215,606
43.5
1
1
1
NCBI RefSeq
Annotation submitted by NCBI RefSeq
2021-02-12
4,536
4,237
211
9384377;11918817;12682299;19383706;23429746;29280348;37002859
GCF_000009065.1
PRJNA224116
SAMEA1705942
na
na
214,092
632
Yersinia pestis CO92
strain=CO92
na
latest
Complete Genome
Major
Full
2001-10-15
ASM906v1
Sanger Institute
GCA_000009065.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/065/GCF_000009065.1_ASM906v1/
na
na
na
haploid
bacteria
4,829,855
4,829,855
47.5
4
4
4
NCBI RefSeq
GCF_000009065.1-RS_2025_06_03
2025-06-03
4,411
4,094
100
11274119;11586360;12834539
GCF_000009085.1
PRJNA57587
na
na
reference genome
192,222
197
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
strain=NCTC 11168
na
latest
Complete Genome
Major
Full
2001-09-27
ASM908v1
Sanger Institute
GCA_000009085.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/085/GCF_000009085.1_ASM908v1/
na
na
na
haploid
bacteria
1,641,481
1,641,481
30.5
1
1
1
NCBI RefSeq
Annotation submitted by NCBI RefSeq
2022-07-18
1,668
1,572
56
10688204;17565669
GCF_000009105.1
PRJNA224116
SAMEA1705949
na
na
122,587
487
Neisseria meningitidis Z2491
strain=Z2491
na
latest
Complete Genome
Major
Full
2001-09-27
ASM910v1
Sanger Institute
GCA_000009105.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/105/GCF_000009105.1_ASM910v1/
na
na
na
haploid
bacteria
2,184,406
2,184,406
52
1
1
1
NCBI RefSeq
GCF_000009105.1-RS_2025_02_10
2025-02-10
2,209
1,964
74
10761919
GCF_000009125.1
PRJNA224116
SAMEA3138192
na
na
267,608
1,310,165
Ralstonia pseudosolanacearum GMI1000
strain=GMI1000
na
latest
Complete Genome
Major
Full
2001-12-12
ASM912v1
Genoscope
GCA_000009125.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/125/GCF_000009125.1_ASM912v1/
na
assembly from type material
na
haploid
bacteria
5,810,922
5,810,922
67
2
2
2
NCBI RefSeq
GCF_000009125.1-RS_2024_09_22
2024-09-22
5,199
5,001
75
11823852
GCF_000009145.1
PRJNA224116
SAMEA3138193
na
na
228,410
915
Nitrosomonas europaea ATCC 19718
strain=ATCC 19718
na
latest
Complete Genome
Major
Full
2003-04-30
ASM914v1
DOE Joint Genome Institute
GCA_000009145.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/145/GCF_000009145.1_ASM914v1/
na
na
na
haploid
bacteria
2,812,094
2,812,094
50.5
1
1
1
NCBI RefSeq
GCF_000009145.1-RS_2025_04_26
2025-04-26
2,683
2,573
48
12700255
GCF_000009165.1
PRJNA224116
SAMEA3138194
na
na
316,273
456,327
Xanthomonas euvesicatoria pv. vesicatoria str. 85-10
strain=85-10
na
latest
Complete Genome
Major
Full
2005-10-23
ASM916v1
Bielefeld University
GCA_000009165.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/165/GCF_000009165.1_ASM916v1/
na
na
na
haploid
bacteria
5,420,152
5,420,152
64.5
5
5
5
NCBI RefSeq
GCF_000009165.1-RS_2025_05_05
2025-05-05
4,717
4,448
100
16237009
GCF_000009185.1
PRJNA224116
SAMEA3138195
na
reference genome
362,976
293,091
Haloquadratum walsbyi DSM 16790
strain=DSM 16790 = HBSQ001
na
latest
Complete Genome
Major
Full
2006-07-25
ASM918v1
Max Planck Institute
GCA_000009185.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/185/GCF_000009185.1_ASM918v1/
na
na
na
haploid
archaea
3,179,361
3,179,361
48
2
2
2
NCBI RefSeq
GCF_000009185.1-RS_2024_10_21
2024-10-21
2,936
2,705
53
16820047
GCF_000009205.2
PRJNA224116
SAMEA1705932
na
na
272,563
1,496
Clostridioides difficile 630
strain=630
na
latest
Complete Genome
Major
Full
2017-09-29
ASM920v2
Sanger Institute
GCA_000009205.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/205/GCF_000009205.2_ASM920v2/
na
na
na
haploid
bacteria
4,298,133
4,298,133
29
2
2
2
NCBI RefSeq
GCF_000009205.2-RS_2026_02_28
2026-02-28
3,978
3,804
124
16804543;21349987;24568651
GCF_000009245.1
PRJNA224116
SAMEA3138197
na
na
376,619
263
Francisella tularensis subsp. holarctica LVS
strain=LVS
na
latest
Complete Genome
Major
Full
2006-03-08
ASM924v1
LLNL
GCA_000009245.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/245/GCF_000009245.1_ASM924v1/
na
na
na
haploid
bacteria
1,895,994
1,895,994
32
1
1
1
NCBI RefSeq
GCF_000009245.1-RS_2025_02_10
2025-02-10
1,974
1,632
52
na
GCF_000009265.1
PRJNA224116
SAMEA1705944
na
reference genome
216,596
3,019,933
Rhizobium johnstonii 3841
strain=3841
na
latest
Complete Genome
Major
Full
2006-10-17
ASM926v1
Sanger Institute
GCA_000009265.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/265/GCF_000009265.1_ASM926v1/
na
assembly from type material
na
haploid
bacteria
7,751,309
7,751,309
61
7
7
7
NCBI RefSeq
GCF_000009265.1-RS_2024_07_29
2024-07-29
7,503
7,201
65
16640791
GCF_000009285.1
PRJNA224116
SAMEA3283071
na
na
381,666
106,590
Cupriavidus necator H16
strain=H16
na
latest
Complete Genome
Major
Full
2006-09-01
ASM928v2
Gottingen Genomics Laboratory
GCA_000009285.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/285/GCF_000009285.1_ASM928v2/
na
na
na
haploid
bacteria
7,416,678
7,416,678
66.5
3
3
3
NCBI RefSeq
GCF_000009285.1-RS_2025_02_11
2025-02-11
6,894
6,630
80
12948488;16964242
GCF_000009305.1
PRJNA224116
SAMEA3138199
na
reference genome
382,638
212
Helicobacter acinonychis str. Sheeba
strain=Sheeba
na
latest
Complete Genome
Major
Full
2006-07-01
ASM930v1
Penn State Univ.
GCA_000009305.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/305/GCF_000009305.1_ASM930v1/
na
na
na
haploid
bacteria
1,557,588
1,557,588
38
2
2
2
NCBI RefSeq
GCF_000009305.1-RS_2025_03_29
2025-03-29
1,539
1,367
45
16789826
GCF_000009325.1
PRJNA224116
SAMEA3138200
na
na
393,115
263
Francisella tularensis subsp. tularensis FSC198
strain=FSC 198
na
latest
Complete Genome
Major
Full
2006-07-25
ASM932v1
University of Birmingham
GCA_000009325.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/325/GCF_000009325.1_ASM932v1/
na
na
na
haploid
bacteria
1,892,616
1,892,616
32.5
1
1
1
NCBI RefSeq
GCF_000009325.1-RS_2025_02_10
2025-02-10
1,941
1,723
52
na
GCF_000009345.1
PRJNA224116
SAMEA1705958
na
na
393,305
630
Yersinia enterocolitica subsp. enterocolitica 8081
strain=8081
na
latest
Complete Genome
Major
Full
2007-01-19
ASM934v1
Sanger Institute
GCA_000009345.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/345/GCF_000009345.1_ASM934v1/
na
na
na
haploid
bacteria
4,683,620
4,683,620
47
2
2
2
NCBI RefSeq
GCF_000009345.1-RS_2025_04_02
2025-04-02
4,334
4,079
118
12834539;17173484
GCF_000009365.1
PRJNA224116
SAMEA3138202
na
reference genome
393,595
59,754
Alcanivorax borkumensis SK2
strain=SK2
na
latest
Complete Genome
Major
Full
2006-07-28
ASM936v1
German Research Centre for Biotechnology
GCA_000009365.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/365/GCF_000009365.1_ASM936v1/
na
assembly from type material
na
haploid
bacteria
3,120,143
3,120,143
54.5
1
1
1
NCBI RefSeq
GCF_000009365.1-RS_2024_12_13
2024-12-13
2,833
2,761
55
16878126
GCF_000009385.1
PRJNA224116
SAMEA1705956
na
na
160,491
1,314
Streptococcus pyogenes str. Manfredo
strain=Manfredo
na
latest
Complete Genome
Major
Full
2007-04-03
ASM938v1
Sanger Institute
GCA_000009385.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/385/GCF_000009385.1_ASM938v1/
na
na
na
haploid
bacteria
1,841,271
1,841,271
38.5
1
1
1
NCBI RefSeq
GCF_000009385.1-RS_2025_02_10
2025-02-10
1,884
1,736
88
17012393
GCF_000009405.1
PRJNA224116
SAMEA2272563
na
na
396,513
1,281
Staphylococcus carnosus subsp. carnosus TM300
strain=TM300
na
latest
Complete Genome
Major
Full
2009-03-03
ASM940v1
Competence Network PathoGenoMik
GCA_000009405.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/405/GCF_000009405.1_ASM940v1/
na
na
na
haploid
bacteria
2,566,424
2,566,424
34.5
1
1
1
NCBI RefSeq
GCF_000009405.1-RS_2025_02_10
2025-02-10
2,535
2,397
80
19060169
GCF_000009425.1
PRJNA224116
SAMEA3138204
na
na
416,870
1,359
Lactococcus cremoris subsp. cremoris MG1363
strain=MG1363
na
latest
Complete Genome
Major
Full
2007-02-09
ASM942v1
MG1363 Sequencing Consortium
GCA_000009425.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/425/GCF_000009425.1_ASM942v1/
na
na
na
haploid
bacteria
2,529,478
2,529,478
35.5
1
1
1
NCBI RefSeq
GCF_000009425.1-RS_2024_09_17
2024-09-17
2,590
2,386
86
17307855
GCF_000009445.1
PRJNA224116
SAMEA2272684
na
na
410,289
1,773
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2
strain=BCG Pasteur 1173P2
na
latest
Complete Genome
Major
Full
2007-01-10
ASM944v1
Mycobacterium bovis sequencing teams
GCA_000009445.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/445/GCF_000009445.1_ASM944v1/
na
na
na
haploid
bacteria
4,374,522
4,374,522
65.5
1
1
1
NCBI RefSeq
GCF_000009445.1-RS_2025_06_29
2025-06-29
4,116
3,818
53
17372194
GCF_000009465.1
PRJNA224116
SAMEA1705939
na
na
272,831
487
Neisseria meningitidis FAM18
strain=FAM18
na
latest
Complete Genome
Major
Full
2007-01-10
ASM946v1
Sanger Institute
GCA_000009465.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/465/GCF_000009465.1_ASM946v1/
na
na
na
haploid
bacteria
2,194,961
2,194,961
51.5
1
1
1
NCBI RefSeq
GCF_000009465.1-RS_2025_04_20
2025-04-20
2,204
1,971
75
17305430
GCF_000009485.1
PRJNA224116
SAMEA1705928
na
na
216,591
95,486
Burkholderia cenocepacia J2315
strain=J2315
na
latest
Complete Genome
Major
Full
2008-09-24
ASM948v1
Sanger Institute
GCA_000009485.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/485/GCF_000009485.1_ASM948v1/
na
na
na
haploid
bacteria
8,055,782
8,055,782
67
4
4
4
NCBI RefSeq
GCF_000009485.1-RS_2025_02_10
2025-02-10
7,448
7,249
97
18931103
GCF_000009505.1
PRJNA224116
SAMEA1705941
na
na
550,537
28,901
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
strain=P125109
na
latest
Complete Genome
Major
Full
2008-10-01
ASM950v1
Wellcome Trust Sanger Institute
GCA_000009505.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/505/GCF_000009505.1_ASM950v1/
na
na
na
haploid
bacteria
4,685,848
4,685,848
52
1
1
1
NCBI RefSeq
GCF_000009505.1-RS_2025_03_15
2025-03-15
4,569
4,285
120
18583645
GCF_000009525.1
PRJNA224116
SAMEA1705927
na
na
550,538
28,901
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
strain=287/91
na
latest
Complete Genome
Major
Full
2008-09-19
ASM952v1
Wellcome Trust Sanger Institute
GCA_000009525.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/525/GCF_000009525.1_ASM952v1/
na
na
na
haploid
bacteria
4,658,697
4,658,697
52
1
1
1
NCBI RefSeq
GCF_000009525.1-RS_2025_03_15
2025-03-15
4,523
4,060
109
18583645
GCF_000009545.1
PRJNA224116
SAMEA3138207
na
na
218,495
1,349
Streptococcus uberis 0140J
strain=0140J
na
latest
Complete Genome
Major
Full
2009-01-30
ASM954v1
Sanger Institute
GCA_000009545.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/545/GCF_000009545.1_ASM954v1/
na
na
na
haploid
bacteria
1,852,352
1,852,352
36.5
1
1
1
NCBI RefSeq
GCF_000009545.1-RS_2025_02_10
2025-02-10
1,883
1,776
78
na
GCF_000009565.1
PRJNA224116
SAMEA2272558
na
na
469,008
562
Escherichia coli BL21(DE3)
strain=BL21(DE3)
na
latest
Complete Genome
Major
Full
2012-05-16
ASM956v1
Austrian Center for Biopharmaceutical Technology
GCA_000009565.2
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/565/GCF_000009565.1_ASM956v1/
na
na
na
haploid
bacteria
4,558,947
4,558,947
51
1
1
1
NCBI RefSeq
GCF_000009565.1-RS_2025_06_09
2025-06-09
4,449
4,141
116
na
GCF_000009585.1
PRJNA224116
SAMEA2272644
na
na
523,796
1,280
Staphylococcus aureus subsp. aureus ST398
strain=type strain:ST398
S0385
latest
Complete Genome
Major
Full
2012-05-15
ASM958v1
University Medical Centre Utrecht
GCA_000009585.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/585/GCF_000009585.1_ASM958v1/
na
na
na
haploid
bacteria
2,885,367
2,885,367
33
4
4
4
NCBI RefSeq
GCF_000009585.1-RS_2025_03_16
2025-03-16
2,879
2,687
80
20546576
GCF_000009605.1
PRJNA224116
SAMD00061095
na
na
107,806
9
Buchnera aphidicola str. APS (Acyrthosiphon pisum)
strain=APS
Tokyo1998
latest
Complete Genome
Major
Full
2001-09-13
ASM960v1
Rikken GSC
GCA_000009605.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/605/GCF_000009605.1_ASM960v1/
na
na
na
haploid
bacteria
655,725
655,725
26.5
3
3
3
NCBI RefSeq
GCF_000009605.1-RS_2025_03_15
2025-03-15
627
578
37
10993077
GCF_000009625.1
PRJNA224116
SAMD00061086
na
na
266,835
2,066,070
Mesorhizobium japonicum MAFF 303099
strain=MAFF 303099
na
latest
Complete Genome
Major
Full
2005-01-06
ASM962v1
Kazusa
GCA_000009625.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/625/GCF_000009625.1_ASM962v1/
na
assembly from type material
na
haploid
bacteria
7,596,297
7,596,297
62.5
3
3
3
NCBI RefSeq
GCF_000009625.1-RS_2025_04_23
2025-04-23
7,449
7,162
62
11214968
GCF_000009645.1
PRJNA224116
SAMD00061099
na
na
158,879
1,280
Staphylococcus aureus subsp. aureus N315
strain=N315
na
latest
Complete Genome
Major
Full
2003-03-24
ASM964v1
Juntendo Univ.
GCA_000009645.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/645/GCF_000009645.1_ASM964v1/
na
na
na
haploid
bacteria
2,839,469
2,839,469
33
2
2
2
NCBI RefSeq
GCF_000009645.1-RS_2025_03_15
2025-03-15
2,816
2,657
81
11418146
GCF_000009665.1
PRJNA224116
SAMD00061098
na
na
158,878
1,280
Staphylococcus aureus subsp. aureus Mu50
strain=Mu50
na
latest
Complete Genome
Major
Full
2005-01-13
ASM966v1
Juntendo Univ.
GCA_000009665.1
identical
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/665/GCF_000009665.1_ASM966v1/
na
na
na
haploid
bacteria
2,903,636
2,903,636
33
2
2
2
NCBI RefSeq
NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
2024-02-17
2,911
2,748
79
11418146;15141945