Datasets:

nicolas-lynn
/

norman-perturb

Tasks:

Tabular Regression

Modalities:

Formats:

Size:

Tags:

gene-expression

Libraries:

License:

Dataset card Data Studio Files Files and versions

390 MB

1 contributor

History: 12 commits

nicolas-lynn's picture

Random sample of perturbed single cells for end-to-end DE verification

444d39c verified 3 months ago

.gitattributes

2.68 kB
Random sample of perturbed single cells for end-to-end DE verification 3 months ago
README.md

4.46 kB
Add files using upload-large-folder tool 3 months ago
all_candidates_scored.csv

8.57 kB
Add files using upload-large-folder tool 3 months ago
controls_singlecell.h5ad

23.8 MB
xet

Add 3000 random control single-cell samples (raw counts) 3 months ago
de_log2fc.parquet

24.4 MB
xet

Paired-pipeline DE (mean of 50 cells per side, source native units) 3 months ago
de_manifest.json

498 Bytes
Add files using upload-large-folder tool 3 months ago
de_padj.parquet

24.5 MB
xet

Paired-pipeline DE BH-adjusted padj 3 months ago
de_pvalue.parquet

37.3 MB
xet

Paired-pipeline DE p-values 3 months ago
manifest.json

453 Bytes
Add files using upload-large-folder tool 3 months ago
perturbation_deltas.parquet

47.2 MB
xet

Add files using upload-large-folder tool 3 months ago
perturbation_zscores.parquet

47.2 MB
xet

Add files using upload-large-folder tool 3 months ago
perturbations_singlecell.h5ad

177 MB
xet

Random sample of perturbed single cells for end-to-end DE verification 3 months ago
pseudobulks.h5ad

8.22 MB
xet

Add files using upload-large-folder tool 3 months ago
retained_perturbations.csv

26.7 kB
Add files using upload-large-folder tool 3 months ago
retained_perturbations_de.csv

50.4 kB
Recompute retained_perturbations_de.csv with paired-pipeline DE definition (unfiltered mean shift) 3 months ago