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Datasets:
nicolas-lynn
/
vcc-perturb
Like
0
Tasks:
Tabular Regression
Modalities:
Tabular
Text
Formats:
parquet
Size:
< 1K
Tags:
perturb-seq
single-cell
crispri
crispra
perturbation
gene-expression
Libraries:
Datasets
Dask
Polars
+ 1
License:
cc-by-4.0
Dataset card
Data Studio
Files
Files and versions
xet
Community
1
main
vcc-perturb
1.56 GB
1 contributor
History:
12 commits
nicolas-lynn
Paired-pipeline DE p-values
998599d
verified
3 months ago
.gitattributes
Safe
2.67 kB
VCC coexpression matrix (gene-gene Pearson, all 221,273 cells)
3 months ago
README.md
Safe
4.51 kB
VCC 2025 H1 perturb-seq atlas (CORE: parquet matrices + pseudobulks + metadata)
3 months ago
all_candidates_scored.csv
Safe
5.71 kB
VCC 2025 H1 perturb-seq atlas (CORE: parquet matrices + pseudobulks + metadata)
3 months ago
coexpression.h5ad
1.23 GB
xet
VCC coexpression matrix (gene-gene Pearson, all 221,273 cells)
3 months ago
controls_singlecell.h5ad
207 MB
xet
Add 10000 random control single-cell samples (raw counts)
3 months ago
de_log2fc.parquet
15.9 MB
xet
Paired-pipeline DE (mean of 50 cells per side, source native units)
3 months ago
de_manifest.json
Safe
558 Bytes
VCC 2025 H1 perturb-seq atlas (CORE: parquet matrices + pseudobulks + metadata)
3 months ago
de_padj.parquet
17 MB
xet
Paired-pipeline DE BH-adjusted padj
3 months ago
de_pvalue.parquet
26.8 MB
xet
Paired-pipeline DE p-values
3 months ago
manifest.json
Safe
514 Bytes
VCC 2025 H1 perturb-seq atlas (CORE: parquet matrices + pseudobulks + metadata)
3 months ago
perturbation_deltas.parquet
30.4 MB
xet
VCC 2025 H1 perturb-seq atlas (CORE: parquet matrices + pseudobulks + metadata)
3 months ago
perturbation_zscores.parquet
30.4 MB
xet
VCC 2025 H1 perturb-seq atlas (CORE: parquet matrices + pseudobulks + metadata)
3 months ago
pseudobulks.h5ad
4.39 MB
xet
VCC 2025 H1 perturb-seq atlas (CORE: parquet matrices + pseudobulks + metadata)
3 months ago
retained_perturbations.csv
Safe
16.5 kB
VCC 2025 H1 perturb-seq atlas (CORE: parquet matrices + pseudobulks + metadata)
3 months ago
retained_perturbations_de.csv
Safe
29.5 kB
Recompute retained_perturbations_de.csv with paired-pipeline DE definition (unfiltered mean shift)
3 months ago
